Senior Bioinformatics Data Engineer

21 hours ago


Remote Wrocław Warszawa Kraków, Czech Republic Holisticon Connect Full time

About the Role

We are seeking an experienced Senior Bioinformatics Data Engineer to join our team at Holisticon Connect. In this role, you will play a critical part in advancing our data stack and automation capabilities, ensuring the reliability, scalability, and performance of ETL pipelines and data systems.

Your Key Responsibilities

  • Develop, execute, and maintain ETL pipelines for extracting, transforming, and loading data for use in cBio and other bioinformatics analysis and visualizations;
  • Ensure the reliability, scalability, and performance of ETL pipelines and data systems;
  • Troubleshoot and resolve issues related to data loading and integration into downstream systems;
  • Collaborate with bioinformaticians, data scientists, and other stakeholders to understand and meet the data needs and requirements of the organization;
  • Stay up-to-date with new technologies and best practices in bioinformatics.

About You

To be successful in this role, you will have:

  • Expertise in SQL, Python, pandas, Airflow, NumPy, HDFS, NoSQL, Unix, Linux, ETL, data pipelines, and AWS (including Glue, S3, EC2, CloudWatch, SNS, and Lambda);
  • A strong understanding of software development, testing, and quality processes, with experience using testing frameworks and documentation;
  • Experience working across multiple scientific compute environments to create data workflows and pipelines;
  • Excellent problem-solving skills and the ability to work independently and collaboratively as part of a team.

What We Offer

  • A dynamic and supportive work environment;
  • The opportunity to work on challenging projects and contribute to the growth and success of our organization;
  • A competitive salary and benefits package, including sport subscription, training budget, private healthcare, flat structure, small teams, international projects, free coffee, free beverages, and modern office facilities.

About Us

Holisticon Connect is a division within NEXER GROUP, a custom software development company based in Poland. With a team of over 140 people and offices in Wrocław, Warsaw, and Cracow, we have the opportunity to work with world-renowned brands from Scandinavia, the UK, and Western Europe. Our goal is to grow stronger in competence rather than numbers.



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