Bioinformatics Data Engineering Specialist
1 day ago
We are seeking a highly skilled Senior Bioinformatics Data Engineer to support the operation and engineering needs of cBioPortal.
Key Responsibilities:- Develop, execute, and maintain ETL pipelines for extracting, transforming, and loading data for use in cBio and other bioinformatics analysis and visualizations.
- Ensure the reliability, scalability, and performance of ETL pipelines and data systems.
- Troubleshoot and resolve issues related to data loading and integration into downstream systems.
- Collaborate with bioinformaticians, data scientists, and other stakeholders to understand and meet the data needs and requirements of the organization.
Holisticon Connect is a dynamic and growing company that values innovation and expertise. As a Senior Bioinformatics Data Engineer, you will have the opportunity to work on cutting-edge projects and contribute to the advancement of our data stack.
Requirements:- Strong understanding of ETL processes and data pipeline development.
- Experience working across multiple scientific compute environments to create data workflows and pipelines.
- Familiarity with bioinformatics visualizations in different omics domains.
- Expertise in Python and Python data/scientific libraries such as pandas, NumPy, and Polars.
- Proven experience with bioinformatics visualization systems like cBioPortal.
- Ability to interact with various data sources, including structured and unstructured data.
- Experience with deploying data pipelines using orchestration services like Airflow and Prefect.
- Understanding of software development, testing, and quality processes.
- A competitive salary and benefits package.
- Ongoing training and professional development opportunities.
- A collaborative and dynamic work environment.
- The chance to work on exciting and challenging projects.
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