Bioinformatics Data Engineering Specialist

1 day ago


Remote Wrocław Warszawa Kraków, Czech Republic Holisticon Connect Full time

We are seeking a highly skilled Senior Bioinformatics Data Engineer to support the operation and engineering needs of cBioPortal.

Key Responsibilities:
  • Develop, execute, and maintain ETL pipelines for extracting, transforming, and loading data for use in cBio and other bioinformatics analysis and visualizations.
  • Ensure the reliability, scalability, and performance of ETL pipelines and data systems.
  • Troubleshoot and resolve issues related to data loading and integration into downstream systems.
  • Collaborate with bioinformaticians, data scientists, and other stakeholders to understand and meet the data needs and requirements of the organization.

Holisticon Connect is a dynamic and growing company that values innovation and expertise. As a Senior Bioinformatics Data Engineer, you will have the opportunity to work on cutting-edge projects and contribute to the advancement of our data stack.

Requirements:
  • Strong understanding of ETL processes and data pipeline development.
  • Experience working across multiple scientific compute environments to create data workflows and pipelines.
  • Familiarity with bioinformatics visualizations in different omics domains.
  • Expertise in Python and Python data/scientific libraries such as pandas, NumPy, and Polars.
  • Proven experience with bioinformatics visualization systems like cBioPortal.
  • Ability to interact with various data sources, including structured and unstructured data.
  • Experience with deploying data pipelines using orchestration services like Airflow and Prefect.
  • Understanding of software development, testing, and quality processes.
What We Offer:
  • A competitive salary and benefits package.
  • Ongoing training and professional development opportunities.
  • A collaborative and dynamic work environment.
  • The chance to work on exciting and challenging projects.


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